Inbreeding: Genetic diversity is the basis of evolutionary potential of species to respond to environmental change and disease. Due to habitat fragmentation and disappearing strains and breeds for human food production, the long term consequences of inbreeding on the evolutionary persistence of lineages is a rapidly growing concern for conservation and livestock genetics. The social spiders offer a unique opportunity to study the effects of inbreeding, as sociality in spiders is accompanied by a switch to inbreeding. Inbreeding and consequent low genetic variability may be the primary cause of the apparent long-term failure of sociality. Recently, in collaboration with Drs Wayne Maddison and Leticia Avilés, my research has begun to focus on the long term consequences of inbreeding on the genetic variability and evolvability of lineages (Agnarsson et al. 2009). Broadly I'm interested in studying traits that incur conflict in time scales, or levels of selection; traits (e.g. asexuality) beneficial for individuals or groups in the short term but that may lead to long term failure of the trait-bearing lineage.
Cetacean phylogenetics and evolution of acoustic communication: Cetacea-whales, porpoises, and dolphins-is one of the most intensely studied groups of organisms on earth. Among the most intriguing aspects of cetacean biology is their complexity of communication though acoustic signals. While interest in the phylogenetic position of cetaceans, and the interrelationship of their major lineages (e.g. toothed whales and baleen whales) is intense, the lower level phylogenetics (relationships among species) have lagged behind. Perhaps consequently, while hypotheses about the evolution of cetacean acoustic communication abound, they remain effectively 'phylogeny-independent', hence in a very real sense untested. In collaboration with Laura May-Collado we have provided the most detailed species-level phylogeny of Cetacea to date (May-Collado and Agnarsson 2006), and are using it to test some of the prominent hypotheses on the evolution of acoustics (May-Collado et al. 2007a, b).
Morphology and homology: My work on morphology mostly serves to gather character data for phylogenetics (Agnarsson 2003c, 2004, 2005, 2006a; Agnarsson & Kuntner 2005). As such I am interested in the theoretical problem of proposing and testing homology hypotheses. In collaboration with Jonathan Coddington we have developed the first quantitative method to test character homology, a step towards reducing the subjectivity of character coding (Agnarsson and Coddington 2008).
Theridiidae: The family Theridiidae is one of the largest spider families and well known for their ecological, morphological, and behavioral diversity. However, prior to the work of my collaborators and I, no phylogeny existed preventing the testing of a myriad of hypothesis on the evolution of various traits and behaviors. To date,we have proposed cladistic hypotheses for about half of the theridiid genera (Agnarsson 2003c, 2004, 2005, 2006a, b, c; Agnarsson and Kuntner 2005; Avilés et al. 2006, Arnedo et al. 2004, 2007). These phylogenies offer the essential backbone for hypothesis testing in the diverse fields these spiders serve as exemplar study organisms. To date, we have proposed cladistic hypotheses for 35 theridiid genera based on
morphology (Agnarsson 2003c, 2004, 2006) and over 40 genera based on molecular data (Arnedo et al. 2004, 2007), with an overlap of 32 genera between the two datasets. These phyologenies thus represent nearly half of the theridiid genera and all the subfamilies.
study of spider sociality. I have revised all the New World Anelosimus species, in addition to species from Madagascar (Agnarsson and Kuntner 2005), and mainland Africa and Southeast Asia (Agnarsson and Zhang 2006), and proposed a phylogenetic hypothesis using world-wide exemplars (Agnarsson 2005, 2006b; Agnarsson et al. 2007). Current work focuses on broadening the taxon sampling for species level phylogenies, and on the effect of sociality and inbreeding on genetic diversity and structure (Agnarsson et al. 2009).

